PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010919696.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

TCP

Protein Properties

Length: 390aa MW: 42505.8 Da PI: 7.0297

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010919696.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114	2.1e-35	61	153	2	82
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssasec...eaess 78 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL++ ak ai+el+++ + + +++++ XP_010919696.1 61 TGRKDRHSKVCTAKGLRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKHAKGAIDELAELprwyppaatyasssnP------SpppNQHDH 149 79**************************************************************8877776655432221......121112221 PP TCP 79 sssa 82 + XP_010919696.1 150 LHDQ 153 1111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-31	61	138	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.226	63	121	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MEESPPHHHH HHSHDEQKLL HHHNHHHHQQ RPPPHNSRLG TLREGGGQVV EVAGGHIVRS 60 TGRKDRHSKV CTAKGLRDRR VRLSAHTAIQ FYDVQDRLGY DRPSKAVDWL IKHAKGAIDE 120 LAELPRWYPP AATYASSSNP SPPPNQHDHL HDQPVPTEPS AEQAAYSTGN FLPPPLDSDS 180 IADTIKTFFP LATTTASSSY QNHHPPDLLS RSSSQVQDLR LSLQSFQDPM FHQNQIPTAS 240 SQQNFLPGYL AFDATSASWP EQNQRIVAWN VAETSSGEGG GGYGFNMPPP QTVPLHPALG 300 QSQLLSQRGT LQSSILPSVR AWMDPIAAAA GHQIHPAGVH SSSPSVTTTG FVFSGDGGFS 360 GFHIPARIQG EEEHGCIPGK PPSDSSASNQ

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MEESPPHHHH HHSHDEQKLL HHHNHHHHQQ RPPPHNSRLG TLREGGGQVV EVAGGHIVRS  60
TGRKDRHSKV CTAKGLRDRR VRLSAHTAIQ FYDVQDRLGY DRPSKAVDWL IKHAKGAIDE  120
LAELPRWYPP AATYASSSNP SPPPNQHDHL HDQPVPTEPS AEQAAYSTGN FLPPPLDSDS  180
IADTIKTFFP LATTTASSSY QNHHPPDLLS RSSSQVQDLR LSLQSFQDPM FHQNQIPTAS  240
SQQNFLPGYL AFDATSASWP EQNQRIVAWN VAETSSGEGG GGYGFNMPPP QTVPLHPALG  300
QSQLLSQRGT LQSSILPSVR AWMDPIAAAA GHQIHPAGVH SSSPSVTTTG FVFSGDGGFS  360
GFHIPARIQG EEEHGCIPGK PPSDSSASNQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010919696.1	0.0	PREDICTED: transcription factor TCP4-like
Refseq	XP_010919706.1	0.0	PREDICTED: transcription factor TCP4-like
Swissprot	Q8LPR5	2e-87	TCP4_ARATH; Transcription factor TCP4
TrEMBL	M0SW95	1e-109	M0SW95_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P06660_001	1e-109	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5839	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	2e-72	TCP family protein